PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G242100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 632aa    MW: 70404.1 Da    PI: 5.0248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G242100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.3e-14403450355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++h ++ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Prupe.8G242100.1.p 403 ANHVMAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 450
                         5899***********************8.....8*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-4510173IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.638400449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-19402463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-12403449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.90E-15404454No hitNo description
Gene3DG3DSA:4.10.280.101.7E-19404467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-18406455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MAAPPSSSRL RSMLQASVQS VQWTYSLFWQ ICPQQGILVW SDGYYNGAIK TRKTVQPMEV  60
SAEEASLQRS QQLRELYDSL SAGETNQPPA RRPCASLSPE DLTESEWFYL MCVSFSFPPG  120
VGLPGKAYAR RQHVWLTGAN EVDSKTFSRA ILAKTVVCIP LLDGVVELGT IERDEEEEDQ  180
EEDEEAESDS EAETGRNGQP VAPGPNPPAV SAPAAEPSEL MQLEMSEDIR LGSPDDASNN  240
LDSDFHLLAV SQSRVNPADQ QRQADSYRAE STRRWPSVQE PLSSGLQPPP QGPLALEELT  300
HDDTHYSETV STILQRQATR WTDSSSTDQV AYSAQSAFIK WTTRVEHHML VPIEGTSQWL  360
LKYILFSVPF LHTKYRDENS PKSHEGDAST RLRKGTPQDE LSANHVMAER RRREKLNERF  420
IILRSLVPFV TKMDKASILG DTIEYVKQLR KKIQDLEARN VQMEDDQRSR SSGEIHRSNS  480
MKELRSGLTV VERTRVGPPG SDKRKLRIVE GSGGAAVAKP KMMEESPPSP PPPPPQSSPT  540
PMVTGTSLEV SIIESDGLLE LQCPYREGLL LDIMQTLREL RIETTVVQSS LNNGFFVAEL  600
RAKVKENVNG KKISITEVKR VINQIIPQSD S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A2e-191017948222Transcription factor MYC3
4ywc_A2e-191017948222Transcription factor MYC3
4ywc_B2e-191017948222Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408413ERRRRE
2409414RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.75320.0fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4647550.0KJ464755.1 Prunus persica cultivar Stark Red Gold bHLH3 (bHLH3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007200711.10.0hypothetical protein PRUPE_ppa002884m2g, partial
SwissprotE3SXU41e-146BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLM5W5440.0M5W544_PRUPE; Uncharacterized protein (Fragment)
STRINGGSMUA_Achr3P17620_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-122bHLH family protein